19400001 Lecture

WiSe 24/25: Algorithmic Bioinformatics I and Numerics

Knut Reinert

Comments

The following topics are addressed in the lecture: methods for approximate and exact sequence search and comparison. Among those are index based methods, multiple searches, and heuristics for sequence search. In the numerics part we will address rounding errors, condition, and stability.

In the exercises, you will deepen the content and practice analysis and proof techniques.

Please notice that the practical course "Praxis der Algorithmischen Bioinformatik I und Numerik" (19401330) is synchronized with this module. Please inform yourself on the corresponding page.

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Suggested reading

Generelle Bücher/Basic reading:

  • Neil C. Jones, Pavel A. Pevzner: An Introduction to Bioinformatics Algorithms. MIT Press, Cambridge, MA, 2004. ISBN 0-262-10106-8
  • R. Durbin, S. Eddy, A. Krogh, G. Mitchison: Biological sequence analysis. Cambridge University Press, 1998. ISBN 0-521-62971-3
  • David B. Mount: Bioinformatics. Sequence and Genome Analysis. Cold Spring Harbor Laboratory Press, New York, 2001. ISBN 0-87969-608-7
  • Chao, Zhang: Sequence comparison, Theory and Methods: Springer, ISBN: 978-1-85800-319-4
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16 Class schedule

Additional appointments

Thu, 2025-02-20 12:00 - 14:00
Klausur

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Wed, 2025-02-26 10:00 - 12:00
Nachtermin für Review (aktive Teilnahme)

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 006 Seminarraum (Takustr. 9)

Fri, 2025-04-11 10:00 - 12:00
Nachklausur

Location:
T9/SR 006 Seminarraum (Takustr. 9)

Regular appointments

Thu, 2024-10-17 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2024-10-24 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2024-10-31 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2024-11-07 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2024-11-14 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2024-11-21 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2024-11-28 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2024-12-05 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2024-12-12 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2024-12-19 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2025-01-09 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2025-01-16 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2025-01-23 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2025-01-30 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2025-02-06 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2025-02-13 12:00 - 14:00

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Subjects A - Z