19400001
Lecture
Algorithmic Bioinformatics I and Numerics
Knut Reinert
Comments
The following topics are addressed in the lecture: methods for approximate and exact sequence search and comparison. Among those are index based methods, multiple searches, and heuristics for sequence search. In the numerics part we will address rounding errors, condition, stability as well as vector and matrix norms. Also we will address the Gauss elimination and LR decomposition.
In the exercises, you will deepen the content and practice analysis and proof techniques.
Please notice that the practical course "Praxis der Algorithmischen Bioinformatik I und Numerik" (19401330) is synchronized with this module. Please inform yourself on the corresponding page.
closeSuggested reading
Generelle Bücher/Basic reading:
- Neil C. Jones, Pavel A. Pevzner: An Introduction to Bioinformatics Algorithms. MIT Press, Cambridge, MA, 2004. ISBN 0-262-10106-8
- R. Durbin, S. Eddy, A. Krogh, G. Mitchison: Biological sequence analysis. Cambridge University Press, 1998. ISBN 0-521-62971-3
- David B. Mount: Bioinformatics. Sequence and Genome Analysis. Cold Spring Harbor Laboratory Press, New York, 2001. ISBN 0-87969-608-7
- Chao, Zhang: Sequence comparison, Theory and Methods: Springer, ISBN: 978-1-85800-319-4
16 Class schedule
Regular appointments
Thu, 2024-10-17 12:00 - 14:00
Thu, 2024-10-24 12:00 - 14:00
Thu, 2024-10-31 12:00 - 14:00
Thu, 2024-11-07 12:00 - 14:00
Thu, 2024-11-14 12:00 - 14:00
Thu, 2024-11-21 12:00 - 14:00
Thu, 2024-11-28 12:00 - 14:00
Thu, 2024-12-05 12:00 - 14:00
Thu, 2024-12-12 12:00 - 14:00
Thu, 2024-12-19 12:00 - 14:00
Thu, 2025-01-09 12:00 - 14:00
Thu, 2025-01-16 12:00 - 14:00
Thu, 2025-01-23 12:00 - 14:00
Thu, 2025-01-30 12:00 - 14:00
Thu, 2025-02-06 12:00 - 14:00
Thu, 2025-02-13 12:00 - 14:00